It should be noted, however, that mutations in other virulence regulator genes such as covRS and ropB/rgg might also result in loss of SpeB expression in S. pyogenes (Ikebe et al., 2010) These mutations are generally associated with invasive diseases, and their presence may result in a mucoid colony morphology associated with overexpression of hyaluronic acid capsule (Sumby et al., 2006). However (as

expected), none of the strains analysed in present study showed mucoid colonies as they were isolated from patients with noninvasive diseases. Although some strains with the highest SK activity could http://www.selleckchem.com/products/Vorinostat-saha.html be detected in definite variants (such as sk5, sk6, sk15 and sk18), no significant correlation between sk allelic variants and Plg activation could be detected (P value BIBW2992 datasheet > 0.05). This result is contrary to a prior report on association of particular sk alleles with high (sk1 and sk2), low (sk3 and sk7) or no (sk4 and sk8) Plg activation activity (Tewodros et al., 1995). Although this finding is in agreement with a recent report on construction of intrachimeric recombinant SK proteins in which swapping the sk-V1 fragments of sk1 and sk5 variants did not affect of the recombinant proteins (Lizano & Johnston, 2005), more recent studies reported

the potential role of specific critical residues in the 170–182 fragment of sk-V1 region in Plg activation (Aneja et al., 2009). Therefore, diverse sequence heterogeneity in this region of

sk-V1 might not be totally neutral. In fact, our results may imply the inadequacy of currently available PCR/RFLP methods to identify and detect critical nucleotide changes within sk-V1 region in relation to sk allelic variation and functional differences on Plg activation. The nucleotide sequences corresponding to partial length of sk of 11 strains of selective digestion patterns were deposited in GenBank database (GenBank accession no: HM573470, HM573471, HM573472, HM573473, HM573474, HM573475, HQ913573, HQ913574, HQ913575, HQ913576, HM000039). To gain further insights into the role of critical nucleotide changes of sk-V1 region in relation to sk allelic variation and functional differences on Plg activation, we analysed the restriction sites of enzymes (MluI, PvuII, DraI and DdeI) within sk-V1 region of 49 SK gene sequences (11 nucleotide sequences from Depsipeptide nmr present study and others from GenBank database). The results of restriction site mapping indicated that approximately 20% of the restriction sites were in accordance with the synonymous (silent) positions (Malke et al., 1995), while other sites spanned the positions that have not been recognized as critical points within sk-V1 (Aneja et al., 2009). DNA sequence alignment results and restriction site mapping of sk-V1 fragments for three variants (sk2, sk3 and sk5; accession numbers: HM573470, HM573474 and HQ913574, respectively) are demonstrated in Fig. 3.